US5100778A
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US
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Oligosaccharide sequencing
Assignee: Oxford Glycosciences (UK) Ltd
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Filing: 1989-10-03
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Granted: 1992-03-31
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Expires: 2009-10-03
Abstract
Abstract A method of oligosaccharide sequencing in which the components are determined essentially simultaneously is disclosed which comprises a series of steps as follows: A. Placing an identifying label on the reducing terminal residue of the oligosaccharide to be sequenced, B. Dividing said oligosaccharide into a plurality of separate portions of known integer amounts, C. Treating each said portion with a different reagent mix to thereby provide a series of reaction mixtures, D. Pooling known integer amounts of the products from each separate reaction mixture to give a product pool, E. Performing an analysis on said product pool which measures the molar proportions of the reaction products, and F. Reconstructing or identifying the starting oligosaccharide from the molar prevalence of said reaction products.
Inventors
- 👤 Thomas W. Rademacher
- 👤 Mark R. Wormald
- 👤 Raj B. Parekh
- 👤 Christopher J. Edge
- 👤 Raymond A. Dwek
Bibliographic Details
Application Number
—
Jurisdiction
US
Data Source
google_patents
Last Synchronized
2026-10-30 10:58
CPC Classifications
G; G01; G01N; G01N33/00; G01N33/48; G01N33/50; G01N33/66; C; C12; C12Q; C12Q1/00; C12Q1/34; C12Q1/40; C12Q1/54; C12Q1/56; G01N2333/00; G01N2333/90; G01N2333/914; G01N2333/924
Claims Analysis
Total Claims: 13
Claim 1
Independent Claim
127 words
A method of sequencing oligosaccharides comprising: A. Placing an identifying label on the reducing terminal residue of the oligosaccharide to be sequenced. B. Dividing said oligosaccharide into a plurality of separate portions of known integer amounts, C. Reacting each said portion with a different reagent mix for a predetermined period of time or to a predetermined end point and in amounts and proportions sufficient to thereby provide a series of reaction mixtures of cleaved reaction products, D. Pooling known integer amounts of the products from each separate reaction mixture to give a product pool, E. Performing an analysis on said product pool which measures the molar proportions of the reaction products, and F. Reconstructing or identifying the starting oligosaccharide from the molar prevalence of said reaction products.
Claim 2
Independent Claim
127 words
A method of sequencing oligosaccharides comprising: A. Placing an identifying label on the reducing terminal residue of the oligosaccharide to be sequenced. B. Dividing said oligosaccharide into a plurality of separate portions of known integer amounts, C. Reacting each said portion with a different reagent mix for a predetermined period of time or to a predetermined end point and in amounts and proportions sufficient to thereby provide a series of reaction mixtures of cleaved reaction products, D. Pooling known integer amounts of the products from each separate reaction mixture to give a product pool, E. Performing an analysis on said product pool which measures the molar proportions of the reaction products, and F. Reconstructing or identifying the starting oligosaccharide from the molar prevalence of said reaction products.
Claim 3
Dependent Claim
31 words
The method of claim 1 in which the identifying label is selected from the group consisting of a radioactive label, a spectroscopically active reporter group and a chemically active reporter group.
Claim 4
Dependent Claim
29 words
The method of claim 2 in which the identifying label is provided by reduction of the reducing terminal N-acetylglucosamine residues on the oligosaccharide with NaB 3 H 4 .
Claim 5
Dependent Claim
27 words
The method of claim 1 in which the reagent mixes are selected from the group consisting of enzymatic cleavage reagents, chemical cleavage reagents and chemical modification reagents.
Claim 6
Dependent Claim
12 words
The method of claim 4 in which the reagent mixes comprise exoglycosidases.
Claim 7
Dependent Claim
30 words
The method of claim 1 in which the analysis on the product pool is performed by a procedure selected from the group consisting of size exclusion chromatography, HPLC and electrophoresis.
Claim 8
Dependent Claim
31 words
The method of claim 6 in which the analysis on the product pool is performed by determining the relative hydrodynamic volumes of the product pool components by acrylamide gel filtration chromatography.
Claim 9
Dependent Claim
48 words
The method of claim 1 in which the analysis of pool products is monitored by a procedure comprising detecting the presence of an identifying label on said products selected from the group consisting of a radioactive label, a spectroscopically active reporter group and a chemically active reporter group.
Claim 10
Independent Claim
234 words
A method of sequencing oligosaccharides comprising: A. placing an identifying label on the reducing terminus of the oligosaccharide sample to be sequenced, B. dividing said oligosaccharide sample into a plurality of equal portions which are two in number more than the number of disaccharide linkages to be determined, C. reacting each said oligosaccharide sample portion for a predetermined period of time or to a predetermined end point with an array of specific enzyme reagent units which contain one or more of the plurality of enzymes in amounts and proportions sufficient to cleave selected disaccharide linkages existing in said oligosaccharide sample, in which each said linkage is cleaved by only one of said enzymes and in which said reagent units are equal in number to the number of oligosaccharide sample portions and composed as follows: (1) one said reagent unit contains a mixture of all said enzymes, (2) another said reagent unit is a blank which contains none of said enzymes, and (3) the remaining said reagent units each contain a mixture of all said enzymes except one enzyme which is included in each of said other remaining reagent units, D. allowing the enzyme reactions to go to completion to provide a final cleaved product for each said oligosaccharide sample portion, and E. pooling said cleaved products and determining the identity of the oligosaccharide sample by measuring the prevalence of said products quantitatively and simultaneously.
Claim 11
Independent Claim
234 words
A method of sequencing oligosaccharides comprising: A. placing an identifying label on the reducing terminus of the oligosaccharide sample to be sequenced, B. dividing said oligosaccharide sample into a plurality of equal portions which are two in number more than the number of disaccharide linkages to be determined, C. reacting each said oligosaccharide sample portion for a predetermined period of time or to a predetermined end point with an array of specific enzyme reagent units which contain one or more of the plurality of enzymes in amounts and proportions sufficient to cleave selected disaccharide linkages existing in said oligosaccharide sample, in which each said linkage is cleaved by only one of said enzymes and in which said reagent units are equal in number to the number of oligosaccharide sample portions and composed as follows: (1) one said reagent unit contains a mixture of all said enzymes, (2) another said reagent unit is a blank which contains none of said enzymes, and (3) the remaining said reagent units each contain a mixture of all said enzymes except one enzyme which is included in each of said other remaining reagent units, D. allowing the enzyme reactions to go to completion to provide a final cleaved product for each said oligosaccharide sample portion, and E. pooling said cleaved products and determining the identity of the oligosaccharide sample by measuring the prevalence of said products quantitatively and simultaneously.
Claim 12
Independent Claim
234 words
A method of sequencing oligosaccharides comprising: A. placing an identifying label on the reducing terminus of the oligosaccharide sample to be sequenced, B. dividing said oligosaccharide sample into a plurality of equal portions which are more in number than the number of disaccharide linkages to be determined, C. reacting each said oligosaccharide sample portion for a predetermined period of time or to a predetermined end point with an array of specific enzyme reagent units which contain one or more of the plurality of enzymes in amounts and proportions sufficient to cleave selected disaccharide linkages existing in said oligosaccharide sample, in which each said linkage is cleaved by at least one of said enzymes, in which one or more of said linkages is cleaved by more than one of said enzymes and in which the number of said reagent units is sufficient to compensate for degeneracy caused by linkages cleaved by more than one of said enzymes and composed as follows: (1) one said reagent unit is a blank which contains none of said enzymes, and (2) the remaining said reagent units each contain a different mixture of said enzymes, D. allowing the enzyme reactions to go to completion to provide a final cleaved product for each said oligosaccharide sample portion, and E. pooling said cleaved products and determining the identity of the oligosaccharide sample by measuring the prevalence of said products quantitatively and simultaneously.
Claim 13
Independent Claim
234 words
A method of sequencing oligosaccharides comprising: A. placing an identifying label on the reducing terminus of the oligosaccharide sample to be sequenced, B. dividing said oligosaccharide sample into a plurality of equal portions which are more in number than the number of disaccharide linkages to be determined, C. reacting each said oligosaccharide sample portion for a predetermined period of time or to a predetermined end point with an array of specific enzyme reagent units which contain one or more of the plurality of enzymes in amounts and proportions sufficient to cleave selected disaccharide linkages existing in said oligosaccharide sample, in which each said linkage is cleaved by at least one of said enzymes, in which one or more of said linkages is cleaved by more than one of said enzymes and in which the number of said reagent units is sufficient to compensate for degeneracy caused by linkages cleaved by more than one of said enzymes and composed as follows: (1) one said reagent unit is a blank which contains none of said enzymes, and (2) the remaining said reagent units each contain a different mixture of said enzymes, D. allowing the enzyme reactions to go to completion to provide a final cleaved product for each said oligosaccharide sample portion, and E. pooling said cleaved products and determining the identity of the oligosaccharide sample by measuring the prevalence of said products quantitatively and simultaneously.
References Cited (Backward Citations)
US4659659A
Cited
US4751084A
Cited
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